Include IEDB mass spec in mass spec curated training data
@@ -39,8 +39,6 @@ time python curate.py \
--out-csv curated_training_data.no_mass_spec.csv
# With mass-spec data
-# Note that we STILL drop mass-spec data from IEDB here, since this data seems
-# low-quality.
time python curate.py \
--data-iedb \
"$(mhcflurry-downloads path data_iedb)/mhc_ligand_full.csv.bz2" \
@@ -50,6 +48,7 @@ time python curate.py \
"$(mhcflurry-downloads path data_systemhcatlas)/data.csv.bz2" \
--data-abelin-mass-spec \
"$(mhcflurry-downloads path data_published)/abelin2017.hits.csv.bz2" \
+ --include-iedb-mass-spec \
--out-csv curated_training_data.with_mass_spec.csv
bzip2 curated_training_data.no_mass_spec.csv
