increased pseudo count in gtr inference
@@ -825,7 +825,7 @@ class TreeAnc(object):
####################################################################
def infer_gtr(self, marginal=False, site_specific=False, normalized_rate=True,
- fixed_pi=None, pc=1.0, **kwargs):
+ fixed_pi=None, pc=5.0, **kwargs):
"""
Calculates a GTR model given the multiple sequence alignment and the tree.
It performs ancestral sequence inferrence (joint or marginal), followed by
