Updated parameters for covid_abm (non-seattle) for compatibility
@@ -28,17 +28,17 @@ def make_pars():
pars['contacts_guest'] = 30 # Number of contacts per guest per day, estimated
pars['contacts_crew'] = 30 # Number of contacts per crew member per day
pars['incub'] = {
- 'type': 'gaussian',
+ 'type': 'normal',
'params': {
- 'mean': 4.0, # Incubation period, in days, estimated
- 'std': 1.0 # Standard deviation of the serial interval, estimated
+ 'mu': 4.0, # Incubation period, in days, estimated
+ 'sigma': 1.0 # Standard deviation of the serial interval, estimated
}
}
pars['dur'] = {
- 'type': 'gaussian',
+ 'type': 'normal',
'params': {
- 'mean': 12, # Duration of infectiousness, from https://www.nejm.org/doi/full/10.1056/NEJMc2001737
- 'std': 3 # Variance in duration
+ 'mu': 12, # Duration of infectiousness, from https://www.nejm.org/doi/full/10.1056/NEJMc2001737
+ 'sigma': 3 # Variance in duration
}
}
pars['sensitivity'] = 1.0 # Probability of a true positive, estimated
