expose clock_std_dev in commandline
@@ -162,6 +162,7 @@ if __name__ == '__main__':
add_reroot_group(t_parser)
add_gtr_arguments(t_parser)
t_parser.add_argument('--clock-rate', type=float, help="if specified, the rate of the molecular clock won't be optimized.")
+ t_parser.add_argument('--clock-std-dev', type=float, help="standard deviation of the provided clock rate estimate")
t_parser.add_argument('--branch-length-mode', default='auto', type=str, choices=['auto', 'input', 'joint', 'marginal'],
help="If set to 'input', the provided branch length will be used without modification. "
"Note that branch lengths optimized by treetime are only accurate at short evolutionary distances.")
