modify documentation help function n-branches-posterior
@@ -194,9 +194,10 @@ def make_parser():
help=coalescent_description)
t_parser.add_argument('--n-skyline', default="20", type=int,
help="number of grid points in skyline coalescent model")
- t_parser.add_argument('--n-branches-posterior', default=False, type=bool,
- help= "use the posterior probability distributions of divergence times for calculating"
- "the number of branches at each time in the tree or use infered time before present." )
+ t_parser.add_argument('--n-branches-posterior', default=False, action='store_true',
+ help= "add posterior LH to coalescent model: use the posterior probability distributions of "
+ "divergence times for estimating the number of branches when calculating the coalescent merger"
+ "rate or use infered time before present (default)." )
t_parser.add_argument('--plot-tree', default="timetree.pdf",
help = "filename to save the plot to. Suffix will determine format"
" (choices pdf, png, svg, default=pdf)")
