update models_class1_selected_no_mass_spec to more closely match models_class1
@@ -44,25 +44,15 @@ time python ./write_validation_data.py \
wc -l test.csv
-#time mhcflurry-predict \
-# test.csv \
-# --prediction-column-prefix "mhcflurry_unselected_" \
-# --models "$(mhcflurry-downloads path models_class1_unselected)/models" \
-# --out test.csv
-#wc -l test.csv
-
time mhcflurry-class1-select-allele-specific-models \
--data test.csv \
--models-dir "$(mhcflurry-downloads path models_class1_unselected)/models" \
--out-models-dir models \
- --scoring mse consensus \
+ --scoring combined:mse,consensus \
--consensus-num-peptides-per-length 10000 \
- --consensus-min-models 8 \
- --consensus-max-models 8\
- --mse-min-measurements 20 \
- --mse-min-models 8 \
- --mse-max-models 10000 \
- --num-jobs $(expr $PROCESSORS \* 2) --gpus $GPUS --max-workers-per-gpu 2 --max-tasks-per-worker 50
+ --combined-min-models 8 \
+ --combined-max-models 16 \
+ --num-jobs $(expr $PROCESSORS \* 2) --gpus $GPUS --max-workers-per-gpu 2 --max-tasks-per-worker 5
time mhcflurry-calibrate-percentile-ranks \
--models-dir models \
