For stdout output, don't use relative paths.
@@ -284,7 +284,7 @@ class OutputHandler(object):
"""
xml_file_name = self.get_filename(runSet.name, "xml")
- identifier_names = [util.relative_path(run.identifier, xml_file_name) for run in runSet.runs]
+ identifier_names = [run.identifier for run in runSet.runs]
# common prefix of file names
runSet.common_prefix = util.common_base_dir(identifier_names) + os.path.sep
