Updated help text on w_direct.
@@ -159,7 +159,7 @@ Command-line options
# The old w_kinavg
class DKinAvg(AverageCommands):
subcommand = 'kinetics'
- help_text = 'averages and CIs for path-tracing kinetics analysis'
+ help_text = 'Generates rate and flux values from a WESTPA simulation via tracing.'
default_kinetics_file = 'direct.h5'
description = '''\
Calculate average rates/fluxes and associated errors from weighted ensemble
@@ -323,7 +323,7 @@ Command-line options
# The old w_stateprobs
class DStateProbs(AverageCommands):
subcommand = 'probs'
- help_text = 'averages and CIs for path-tracing kinetics analysis'
+ help_text = 'Calculates color and state probabilities via tracing.'
default_kinetics_file = 'direct.h5'
description = '''\
Calculate average populations and associated errors in state populations from
@@ -488,7 +488,7 @@ Command-line options
# Just a convenience class to run everything.
class DAll(DStateProbs, DKinAvg, DKinetics):
subcommand = 'all'
- help_text = 'averages and CIs for path-tracing kinetics analysis'
+ help_text = 'Runs the full suite, including the tracing of events.'
default_kinetics_file = 'direct.h5'
description = '''\
A convenience function to run init/kinetics/probs. Bin assignments,
@@ -515,7 +515,7 @@ Command-line options
# Just a convenience class to average the observables.
class DAverage(DStateProbs, DKinAvg):
subcommand = 'average'
- help_text = 'averages and CIs for path-tracing kinetics analysis'
+ help_text = 'Averages and returns fluxes, rates, and color/state populations.'
default_kinetics_file = 'direct.h5'
description = '''\
A convenience function to run kinetics/probs. Bin assignments,
