fix atropos default model
@@ -113,7 +113,7 @@ def init_brain_extraction_wf(name='brain_extraction_wf',
Estimated peak memory consumption of the most hungry nodes
in the workflow
bids_suffix : str
- Sequence type of the first input image ('T1', 'T2', or 'FLAIR')
+ Sequence type of the first input image ('T1w', 'T2w', or 'FLAIR')
atropos_refine : bool
Enables or disables the whole ATROPOS sub-workflow
atropos_use_random_seed : bool
@@ -352,7 +352,7 @@ def init_atropos_wf(name='atropos_wf',
omp_nthreads=None,
mem_gb=3.0,
padding=10,
- in_segmentation_model=list(ATROPOS_MODELS['T1'].values())):
+ in_segmentation_model=list(ATROPOS_MODELS['T1w'].values())):
"""
Implements supersteps 6 and 7 of ``antsBrainExtraction.sh``,
which refine the mask previously computed with the spatial
