lots of updates here:
1. updated waning parameters via fit to White
2. code changes to adapt to titer shifts
3. several new data points
still need to do bootstrapping for titer shifts
@@ -478,9 +478,9 @@ def get_vaccine_variant_pars(default=False):
pfizer = dict(
wild = 1.0,
- b117 = 1/2.0,
- b1351 = 1/6.7,
- p1 = 1/6.5,
+ b117 = 1/2.0, # https://www.nejm.org/doi/full/10.1056/nejmc2100362
+ b1351 = 1/10.3, # https://www.nejm.org/doi/full/10.1056/nejmc2100362
+ p1 = 1/6.7, # https://www.nejm.org/doi/full/10.1056/nejmc2100362
b16172 = 1/2.9, # https://www.researchsquare.com/article/rs-637724/v1
),
@@ -488,7 +488,7 @@ def get_vaccine_variant_pars(default=False):
wild = 1.0,
b117 = 1/1.8,
b1351 = 1/4.5,
- p1 = 1/8.6,
+ p1 = 1/8.6, # https://www.nejm.org/doi/full/10.1056/nejmc2100362
b16172 = 1/2.9, # https://www.researchsquare.com/article/rs-637724/v1
),
