small merge error
@@ -105,7 +105,6 @@ class TreeTime(ClockTree):
seq_kwargs = {"marginal_sequences":long_branch_mode,
"marginal_branchlength":long_branch_mode,
"sample_from_profile":"root"}
- seq_kwargs = {"marginal":False, "sample_from_profile":"root"}
if "fixed_pi" in kwargs:
seq_kwargs["fixed_pi"] = kwargs["fixed_pi"]
if "do_marginal" in kwargs:
