DOC: Spaces around emdashes, italicize e.g., i.e.
@@ -170,7 +170,7 @@ libraries that provide common functionality via a standardized, simple API.
``PyBIDS`` is a Python package that makes it easier to work with BIDS
datasets. In principle, its scope includes virtually any functionality that is
-likely to be of general use when working with BIDS datasets (i.e., that is not
+likely to be of general use when working with BIDS datasets (*i.e.*, that is not
specific to one narrow context). At present, its core and most widely used
module supports simple and flexible querying and manipulation of BIDS datasets.
PyBIDS makes it easy for researchers and developers working in Python to search
@@ -183,7 +183,7 @@ In addition to this core functionality, PyBIDS also contains an ever-growing
set of modules that support additional capabilities meant to keep up with the
evolution and expansion of the BIDS specification itself. Currently, PyBIDS
includes tools for (1) reading and manipulating data contained in various
-BIDS-defined files (e.g., physiological recordings, event files, or
+BIDS-defined files (*e.g.*, physiological recordings, event files, or
participant-level variables); (2) constructing design matrices and contrasts
that support the new ``BIDS-StatsModel`` specification (for machine-readable
representation of fMRI statistical models); and (3) automated generation of
@@ -192,15 +192,15 @@ partial Methods sections for inclusion in publications.
PyBIDS can be easily installed on all platforms via pip (``pip install
pybids``), though currently it is not officially supported on Windows. The
package has few dependencies outside of standard Python numerical and image
-analysis libraries (i.e., numpy, scipy, pandas, and NiBabel). The core API
+analysis libraries (*i.e.*, numpy, scipy, pandas, and NiBabel). The core API
is deliberately kept minimalistic: nearly all interactions with PyBIDS
functionality occur through a core ``BIDSLayout`` object initialized by passing
in a path to a BIDS dataset. For most applications, no custom configuration
should be required.
Although technically still in alpha release, PyBIDS is already being used both
-as a dependency in dozens of other open-source brain imaging packages--e.g.,
-fMRIPrep [@fmriprep], MRIQC [@mriqc], datalad-neuroimaging
+as a dependency in dozens of other open-source brain imaging packages --
+*e.g.*, fMRIPrep [@fmriprep], MRIQC [@mriqc], datalad-neuroimaging
(https://github.com/datalad/datalad-neuroimaging), and fitlins
(https://github.com/poldracklab/fitlins) -- and directly in many researchers'
custom Python workflows. Development is extremely active, with bug fixes and
