try symlinking atomic densities directory
#!/bin/bash
set -ex
-DENSITY_DIRECTORY=${PREFIX}/share/chargemol/atomic_densities/
+DENSITIES_DIRECTORY=${PREFIX}/share/chargemol/atomic_densities/
# Run Siesta example
cd examples_to_run/SIESTA_chabazite_zeolite_example/DDEC6
+ln -s $DENSITIES_DIRECTORY .
ln -s ../chabazite.XSF chabazite.XSF
-sed -i "s#/home/tamanz/bin/atomic_densities/#${DENSITY_DIRECTORY}#g" job_control.txt
+sed -i "s#/home/tamanz/bin/atomic_densities/#atomic_densities/#g" job_control.txt
chargemol
ls -ltra
