Explicitly refer to name of alignment output in subsampling rule
Follows best practices for Snakemake to support changes to this rule that might
add multiple outputs in the future.
@@ -198,7 +198,7 @@ rule subsample_regions:
"""
python3 scripts/combine-and-dedup-fastas.py \
--input {input} \
- --output {output}
+ --output {output.alignment}
"""
rule adjust_metadata_regions:
