Map "Lineage" to "pango_lineage"
To support GISAID's patient status metadata as an input format that's
consistent with the rest of our workflow, map the "Lineage" column to
its Nextstrain equivalent (since this column contains the PANGO
lineage).
@@ -23,6 +23,7 @@ sanitize_metadata:
- "Gender=sex"
- "Clade=GISAID_clade"
- "Pango lineage=pango_lineage"
+ - "Lineage=pango_lineage"
- "Pangolin version=pangolin_version"
- "Variant=variant"
- "AA Substitutions=aa_substitutions"
