Rename nextalign2 to nextalign
@@ -92,7 +92,7 @@ rule align:
--sequences {input.sequences} \
--strip-prefixes {params.strain_prefixes:q} \
--output /dev/stdout 2> {params.sanitize_log} \
- | nextalign2 run \
+ | nextalign run \
--jobs={threads} \
--reference {input.reference} \
--genemap {input.genemap} \
