override phrasedml.addDotXMLToModelSources
@@ -166,7 +166,7 @@ class inlineOmex:
path = sbml_asset.getModuleName()
phrasedml.setReferencedSBML(path, sbml_asset.getContent())
phrasedml.convertString(t)
- phrasedml.addDotXMLToModelSources()
+ phrasedml.addDotXMLToModelSources(True)
sedml = phrasedml.getLastSEDML()
if sedml is None:
raise RuntimeError('Unable to convert PhraSEDML to SED-ML: {}'.format(phrasedml.getLastError()))
