Minor edits to Terra guide
Uses consistent rST header syntax to match other docs, writes out a full
title with consistent capitalization, links to Terra in the first
mention of the tool, uses consistent capitalization of "WDL", fixes link
to Dockstore page for `ncov:master`, corrects a typo of "upload", and
removes trailing whitespace.
-=====================
-Terra Workflow
-=====================
+*************************
+Run the workflow on Terra
+*************************
-I. Import ``ncov`` wdl workflow from Dockstore
---------------------------------------------------------
+Import ``ncov`` WDL workflow from Dockstore
+===========================================
-1. Set up Terra account
-#. Navigate to Dockstore: `ncov:wdl/master`_
+1. `Setup a Terra account <https://terra.bio/>`_
+#. Navigate to Dockstore: `ncov:master`_
#. Top right corner, under **Launch with**, click on **Terra**
#. Under "Workflow Name" set a name, can also leave default ``ncov``, and select your **Destination Workspace** in the drop down menu.
#. Click button **IMPORT**
#. In your workspace, click on the **WORKFLOWS** tab and verify that the imported workflow is showing a card
-.. _`ncov:wdl/master`: https://dockstore.org/workflows/github.com/nextstrain/ncov:wdl/master?tab=info
+.. _`ncov:master`: https://dockstore.org/workflows/github.com/nextstrain/ncov:master?tab=info
-II. Upload your data files into Terra
---------------------------------------------------------
+Upload your data files into Terra
+=================================
1. Navigate to: `https://app.terra.bio/#upload`_.
#. Select your workspace
#. At the top, hit the **+** button to "create a collection"
-#. Within the collection, at bottom right, click **+** button to uplaod file, or drag and drop files to upload them.
+#. Within the collection, at bottom right, click **+** button to upload file, or drag and drop files to upload them.
#. Go back to your Terra Dashboard
#. Click on the **DATA** tab
#. On the left, under **OTHER DATA**, click **Files** and there should be an "uploads/" folder shown to the right
@@ -29,8 +29,8 @@ II. Upload your data files into Terra
.. _`https://app.terra.bio/#upload`: https://app.terra.bio/#upload
-III. Connect your data files to the wdl workflow
---------------------------------------------------------
+Connect your data files to the WDL workflow
+===========================================
1. On the **DATA** tab, click on **+** next to the **TABLES** section to create a Data Table
#. Download the "sample_template.tsv" file
