Update by asebastian on Thu Oct 19 13:33:09 EDT 2017 from Aswathys-iMac.local
@@ -16,13 +16,18 @@ FASTQC_DIR =$(ANALYSIS_DIR)/fastqc
PTRIM_DIR = $(ANALYSIS_DIR)/trim/trimp
QTRIM_DIR = $(ANALYSIS_DIR)/trim/trimq
UPDATED_SAMPLE_INFO = updated_sampleinfo.txt
-
-
+#
+# commands to run
+#
+{% if trim_primer.value == True and trim_quality.value != None %}
all : trim_primer trim_quality
-
+{% elif trim_primer.value == True %}
all: trim_primer
-
+{% else %}
all : trim_quality
+{% endif %}
+
+
extract:
#
