fix: avoid key error in other profiles
@@ -188,7 +188,7 @@ rule upload_reference_sets:
alignments = expand("results/{build_name}/aligned.fasta", build_name=config["builds"]),
metadata = expand("results/{build_name}/extracted_metadata.tsv", build_name=config["builds"])
params:
- s3_bucket = config["S3_REF_BUCKET"],
+ s3_bucket = config.get("S3_REF_BUCKET",''),
compression = config["S3_DST_COMPRESSION"]
run:
for fname in input.alignments:
