Update by natay on Mon Oct 23 19:10:35 EDT 2017 from natay
USER=www
SERVER=metabarcode.com
-FASTQ_JSON = biostar/tools/fastqc/fastqc.hjson
-FASTQ_TEMPL = biostar/tools/fastqc/fastqc.sh
-QC_JSON = biostar/tools/qc/qc.hjson
-QC_TEMPL = biostar/tools/qc/qc.sh
CLASSIFY_JSON = biostar/tools/classify/classify.hjson
-CLASSIFY_TEMPL = biostar/tools/classify/classify.sh
-EMAIL_JSON = biostar/tools/admin/send_email.hjson
-EMAIL_TEMPL = biostar/tools/admin/send_email.sh
-
serve: init
python manage.py runserver
@@ -39,16 +31,16 @@ hello:
adminjobs:
- python manage.py analysis --add --json $(EMAIL_JSON) --template $(EMAIL_TEMPL) --analysis_usage admin --create_job
+ python manage.py analysis --add --json biostar/tools/admin/send_email.hjson --template biostar/tools/admin/send_email.sh --analysis_usage admin --create_job
jobs:
- python manage.py analysis --add --json $(FASTQ_JSON) --template $(FASTQ_TEMPL) --create_job
- python manage.py analysis --add --json $(QC_JSON) --template $(QC_TEMPL) --create_job
- #python manage.py analysis --add --json $(CLASSIFY_JSON) --template $(CLASSIFY_TEMPL) --create_job
- #python manage.py analysis --add --json $(FASTQ_JSON) --template $(FASTQ_TEMPL) --create_job
- #python manage.py analysis --add --json $(QC_JSON) --template $(QC_TEMPL) --create_job
- #python manage.py analysis --add --json $(CLASSIFY_JSON) --template $(CLASSIFY_TEMPL) --create_job
+ python manage.py analysis --add --json biostar/tools/fastqc/fastqc.hjson --template biostar/tools/fastqc/fastqc.sh --create_job
+ python manage.py analysis --add --json biostar/tools/qc/qc.hjson --template biostar/tools/qc/qc.sh --create_job
+ #python manage.py analysis --add --json biostar/tools/classify/classify.hjson --template $(CLASSIFY_TEMPL) --create_job
+ #python manage.py analysis --add --json biostar/tools/fastqc/fastqc.hjson --template biostar/tools/fastqc/fastqc.sh --create_job
+ #python manage.py analysis --add --json biostar/tools/qc/qc.hjson --template biostar/tools/qc/qc.sh --create_job
+ #python manage.py analysis --add --json biostar/tools/classify/classify.hjson --template biostar/tools/classify/classify.sh --create_job
init:
python manage.py collectstatic --noinput -v 0
