Update by aswathyseb on Tue Nov  7 20:58:39 EST 2017 from MacBook-Air.local
@@ -15,8 +15,8 @@ genome : {
}
align_length : {
- label : Specify length threshold to filter alignments (in base pairs)
- help : Alignment length should be within x base pair distance of read length
+ label : Alignment length offset
+ help : Alignment length = read length +/- alignment length offset
value : 6
range : [0,15]
display_type : INTEGER
@@ -50,8 +50,8 @@ settings : {
# Help
This analysis align input sequences to a reference genome. It produces an alignment based classification table after
-applying filters. The filters remove supplementary and secondary alignments and also those alignments where alignment
-length is not within the user-specified distance from read_length.
+applying filters. The filters remove supplementary and secondary alignments. Filter also removes those alignments where
+alignment length is not within the user-specified distance from read_length.
The input data should be in fastq format.
@@ -62,6 +62,8 @@ Reference genome sequence needs to be provided unless the organism is human or m
1. Input data in fastq format.
2. Reference genome sequence.
+3. Alignment length offset(in base pairs). This is used to remove alignments if alignment length is outside the
+specified distance from read length.
# Results
