fix: disable additional filter
@@ -106,6 +106,7 @@ rule diagnostic:
clock_filter = 20,
snp_clusters = 1,
rare_mutations = 100,
+ clock_plus_rare = 100,
log:
"logs/diagnostics_{origin}.txt"
benchmark:
@@ -120,6 +121,7 @@ rule diagnostic:
--metadata {input.metadata} \
--clock-filter {params.clock_filter} \
--rare-mutations {params.rare_mutations} \
+ --clock-plus-rare {params.clock_plus_rare} \
--snp-clusters {params.snp_clusters} \
--output-exclusion-list {output.to_exclude} 2>&1 | tee {log}
"""
