upload: Remove outdated "_gisaid" suffix from the rule's log and benchmark files
This rule covers multiple potential "origins" (including GISAID).
@@ -214,9 +214,9 @@ rule upload:
params:
s3_bucket = config["S3_DST_BUCKET"],
log:
- "logs/upload_gisaid.txt"
+ "logs/upload.txt"
benchmark:
- "benchmarks/upload_gisaid.txt"
+ "benchmarks/upload.txt"
run:
for fname in input:
cmd = f"./scripts/upload-to-s3 {fname} s3://{params.s3_bucket}/{os.path.basename(fname)} | tee -a {log}"
