rename nextstrain profiles not to clash with defaults
@@ -8,30 +8,30 @@ custom_rules:
# (They override the defaults)
builds:
global:
- subsampling_scheme: region_global
+ subsampling_scheme: nextstrain_region_global
auspice_config: "nextstrain_profiles/nextstrain/global_auspice_config.json"
africa:
- subsampling_scheme: region
+ subsampling_scheme: nextstrain_region
region: Africa
auspice_config: "nextstrain_profiles/nextstrain/africa_auspice_config.json"
asia:
- subsampling_scheme: region
+ subsampling_scheme: nextstrain_region
region: Asia
auspice_config: "nextstrain_profiles/nextstrain/asia_auspice_config.json"
europe:
- subsampling_scheme: region_grouped_by_country
+ subsampling_scheme: nextstrain_region_grouped_by_country
region: Europe
auspice_config: "nextstrain_profiles/nextstrain/europe_auspice_config.json"
north-america:
- subsampling_scheme: region
+ subsampling_scheme: nextstrain_region
region: North America
auspice_config: "nextstrain_profiles/nextstrain/north-america_auspice_config.json"
oceania:
- subsampling_scheme: region
+ subsampling_scheme: nextstrain_region
region: Oceania
auspice_config: "nextstrain_profiles/nextstrain/oceania_auspice_config.json"
south-america:
- subsampling_scheme: region
+ subsampling_scheme: nextstrain_region
region: South America
auspice_config: "nextstrain_profiles/nextstrain/south-america_auspice_config.json"
@@ -105,7 +105,7 @@ slack_channel: "#ncov-gisaid-updates"
subsampling:
# Custom subsampling logic for regions
- region:
+ nextstrain_region:
# Focal samples for region
region:
group_by: "division year month"
@@ -121,14 +121,14 @@ subsampling:
focus: "region"
# Custom subsampling logic for global region.
- region_global:
+ nextstrain_region_global:
global:
group_by: "country year month"
seq_per_group: 16
# Custom subsampling for regions like Europe where grouping by country
# is the smallest resolution requied
- region_grouped_by_country:
+ nextstrain_region_grouped_by_country:
# Focal samples for region
region:
group_by: "country year month"
