Add links to mesh and input file generation in run docs
@@ -58,8 +58,8 @@ or
> pygbe-lspr -h
-Mesh
-~~~~
+Mesh:
+~~~~~
In the ``examples`` folder, we provide meshes and ``.pqr`` files for a
few example problems. To plug in your own protein data, download the
@@ -73,6 +73,15 @@ The meshes for the LSPR examples and some Poisson Boltzmann that involve spheres
where generated with a script called ``mesh_sphere.py`` located in
``pygbe/preprocessing_tools/``.
+In `Generate meshes and pqr <http://barbagroup.github.io/pygbe/docs/mesh_pqr_setup.html>`__ you can find detailed instructions to generate the pqr and meshes.
+
+
+Input and Parameter files:
+~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+You can find detailed instructions to generate these files in the `Input Files section <http://barbagroup.github.io/pygbe/docs/input_format.html>`__.
+
+
Performance:
~~~~~~~~~~~~
