Improve message displayed by `subsample_context` rule
@@ -126,9 +126,9 @@ rule subsample_context:
else
region="${{rgn//[_y]/}}"
region="${{region//[-y]/ }}"
- echo "Filtering for a focal run on $region - context is {params.sequences_per_group} per division"
+ echo "Creating a filtered context for a focal run on $region. Context is {params.sequences_per_group}seqs per '{params.group_by}'"
regionarg="--exclude-where region="
- echo " This is passed to augur as $regionarg'$region'"
+ echo " (This is passed to 'augur filter' as \"$regionarg'$region'\")"
augur filter \
$regionarg"$region" \
