update hmmratac_cmd
-# random annotation
+# Time-stamp: <2021-08-20 15:18:20 taoliu>
-def run():
+"""Description: Main HMMR command
+
+This code is free software; you can redistribute it and/or modify it
+under the terms of the BSD License (see the file LICENSE included with
+the distribution).
+"""
+
+# ------------------------------------
+# python modules
+# ------------------------------------
+
+import os
+import sys
+import logging
+from time import strftime
+
+# ------------------------------------
+# own python modules
+# ------------------------------------
+from MACS3.Utilities.Constants import *
+from MACS3.Utilities.OptValidator import opt_validate_hmmratac
+
+from MACS3.Math.EM import HMMR_EM
+
+
+# ------------------------------------
+# constants
+# ------------------------------------
+
+# ------------------------------------
+# Misc functions
+# ------------------------------------
+
+# ------------------------------------
+# Main function
+# ------------------------------------
+def run( args ):
+ """The HMMRATAC function/pipeline for MACS.
+
+ """
+ options = opt_validate_hmmratac( args )
+ print ( options )
return
