Use file paths from config instead of older files object
@@ -52,7 +52,7 @@ rule export_all_regions:
input:
colors_file = expand("config/colors_{region}.tsv", region=REGIONS),
auspice_json = expand(REGION_PATH + "ncov_with_accessions.json", region=REGIONS),
- lat_longs = files.lat_longs,
+ lat_longs = config["files"]["lat_longs"]
metadata = expand("results/metadata_adjusted{region}.tsv", region=REGIONS),
colors = expand("config/colors{region}.tsv", region=REGIONS),
conda: "../envs/nextstrain.yaml"
