add messages to Snakefile
@@ -5,7 +5,7 @@ ruleorder: subsample_namerica > subsample
rule subsample_focus:
message:
"""
- Filtering to
+ subsample all sequences into a focal set
"""
input:
sequences = rules.mask.output.alignment,
@@ -28,6 +28,11 @@ rule subsample_focus:
"""
rule make_priorities:
+ message:
+ """
+ determine priority for inclusion in as phylogenetic context by
+ genetic similiarity to sequences in focal set.
+ """
input:
alignment = rules.mask.output.alignment,
metadata = rules.download.output.metadata,
@@ -45,7 +50,7 @@ rule make_priorities:
rule subsample_context:
message:
"""
- Filtering to
+ Subsample the non-focal sequences to provide phylogenetic context
"""
input:
sequences = rules.mask.output.alignment,
