revert back to pip install dependencies for non-x86
@@ -59,10 +59,6 @@ jobs:
apt-get install -yq libblas3 liblapack3 libblas-dev liblapack-dev
apt-get install -yq python3 python3-pip python3-wheel
apt-get install -yq procps zlib1g zlib1g-dev
- # install dependencies through debian APT
- # pip install may not work on certain platform
- # apt-get install -yq python3-numpy python3-sklearn cython3
- # apt-get install -yq python3-pytest python3-pytest-cov python3-setuptools
run: |
echo `uname -a`
cd /home/macs3/
@@ -70,13 +66,8 @@ jobs:
cd MACS3
export PATH="/home/macs3/.local/bin:${PATH}"
pip3 install --no-cache-dir --user --upgrade pip
- #pip3 install --no-cache-dir --user hmmlearn
- #pip3 install --no-cache-dir --user cykhash
- #pip3 install --no-cache-dir --user codecov
pip3 install --user --upgrade -r requirements.txt --no-cache-dir
pip3 install --user . --no-cache-dir
# run test
- # Note that since we installed pytest through APT, the
- # name is pytest-3 instead of pytest
- pytest-3 --runxfail && cd test && ./cmdlinetest macs3
+ pytest --runxfail && cd test && ./cmdlinetest macs3
