check parallel running works
@@ -7,6 +7,8 @@ def get_todays_date():
date = datetime.today().strftime('%Y-%m-%d')
return date
+REGIONS = ["_North-America", "_Europe", ""]
+
wildcard_constraints:
region="|_North-America|_Europe"
@@ -26,6 +28,15 @@ wildcard_constraints:
configfile: "config/Snakefile.yaml"
+rule all_regions:
+ input:
+ auspice_json = expand("auspice/ncov{region}.json", region=REGIONS),
+ tip_frequencies_json = expand("auspice/ncov{region}_tip-frequencies.json", region=REGIONS),
+ dated_auspice_json = expand("auspice/ncov{region}_{date}.json", date=get_todays_date(), region=REGIONS),
+ dated_tip_frequencies_json = expand("auspice/ncov{region}_{date}_tip-frequencies.json", date=get_todays_date(), region=REGIONS),
+ auspice_json_gisaid = expand("auspice/ncov{region}_gisaid.json", region=REGIONS),
+ auspice_json_zh = expand("auspice/ncov{region}_zh.json", region=REGIONS)
+
rule all:
input:
auspice_json = "auspice/ncov{region}.json",
