nt downloaded added to Makefile
@@ -17,11 +17,20 @@ biopython:
taxonkit:
conda install -y -c bioconda taxonkit
+blast:
+ # Install blast.
+ conda install -y blast
+
+nt_db:
+ # Install nt database to export/local/nt
+ # Ignores make error.
+ mkdir -p nt
+ (cd nt && update_blastdb.pl --decompress nt) || :
+
taxonomy:
- centrifuge-download -o taxonomy taxonomy
+ # Install taxonomy database to export/local/taxdb
+ # Ignores make error.
+ mkdir -p taxdb
+ (cd taxdb && update_blastdb.pl --decompress taxdb) || :
-link:
- # Link taxonomy to taxonkit.
- mkdir -p ~/.taxonkit
- ln -s `pwd`/taxonomy/names.dmp ~/.taxonkit/
- ln -s `pwd`/taxonomy/nodes.dmp ~/.taxonkit/
+blastdbs: blast taxonomy nt_db
