reduce compression level
@@ -87,8 +87,8 @@ rule align:
--output-basename {params.basename} \
--output-fasta {params.uncompressed_alignment} \
--output-insertions {output.insertions} > {log} 2>&1;
- xz {params.uncompressed_alignment};
- xz {params.outdir}/{params.basename}*.fasta
+ xz -2 {params.uncompressed_alignment};
+ xz -2 {params.outdir}/{params.basename}*.fasta
"""
rule diagnostic:
