fix: duplicated build entries
@@ -134,58 +134,6 @@ builds:
region: South America
auspice_config: "nextstrain_profiles/nextstrain/south-america_auspice_config.json"
- africa-small:
- subsampling_scheme: nextstrain_region
- region: Africa
- auspice_config: "nextstrain_profiles/nextstrain/africa_auspice_config.json"
- asia-small:
- subsampling_scheme: nextstrain_region
- region: Asia
- auspice_config: "nextstrain_profiles/nextstrain/asia_auspice_config.json"
- europe-small:
- subsampling_scheme: nextstrain_region
- region: Europe
- subclades: "nextstrain_profiles/nextstrain/subclades_EU.tsv"
- auspice_config: "nextstrain_profiles/nextstrain/europe_auspice_config.json"
- north-america-small:
- subsampling_scheme: nextstrain_region
- region: North America
- auspice_config: "nextstrain_profiles/nextstrain/north-america_auspice_config.json"
- oceania-small:
- subsampling_scheme: nextstrain_region
- region: Oceania
- auspice_config: "nextstrain_profiles/nextstrain/oceania_auspice_config.json"
- south-america-small:
- subsampling_scheme: nextstrain_region
- region: South America
- auspice_config: "nextstrain_profiles/nextstrain/south-america_auspice_config.json"
-
- africa-xsmall:
- subsampling_scheme: nextstrain_region
- region: Africa
- auspice_config: "nextstrain_profiles/nextstrain/africa_auspice_config.json"
- asia-xsmall:
- subsampling_scheme: nextstrain_region
- region: Asia
- auspice_config: "nextstrain_profiles/nextstrain/asia_auspice_config.json"
- europe-xsmall:
- subsampling_scheme: nextstrain_region
- region: Europe
- subclades: "nextstrain_profiles/nextstrain/subclades_EU.tsv"
- auspice_config: "nextstrain_profiles/nextstrain/europe_auspice_config.json"
- north-america-xsmall:
- subsampling_scheme: nextstrain_region
- region: North America
- auspice_config: "nextstrain_profiles/nextstrain/north-america_auspice_config.json"
- oceania-xsmall:
- subsampling_scheme: nextstrain_region
- region: Oceania
- auspice_config: "nextstrain_profiles/nextstrain/oceania_auspice_config.json"
- south-america-xsmall:
- subsampling_scheme: nextstrain_region
- region: South America
- auspice_config: "nextstrain_profiles/nextstrain/south-america_auspice_config.json"
-
# remove S dropout sequences and sequences without division label in US
filter:
exclude_where: "division='USA' purpose_of_sequencing='S dropout'"
