include exclude paths
@@ -22,8 +22,8 @@ reference_node_name: "USA/WA1/2020"
# align sequences to, colors for strain attributes in auspice, and auspice
# configuration files.
files:
- include: "default_config/seqs_to_include.txt"
- exclude: "default_config/seqs_to_exclude.txt"
+ include: "default_config/include.txt"
+ exclude: "default_config/exclude.txt"
reference: "default_config/reference_seq.gb"
outgroup: "default_config/outgroup.fasta"
ordering: "default_config/geographic_ordering.tsv"
