Update by aswathyseb on Mon Oct 23 23:43:51 EDT 2017 from MacBook-Air.local
@@ -42,37 +42,16 @@ It produces a classification table with species abundance.
# Help
This analysis assigns taxonomic labels to sequence data using a custom database.
-The input data should be in fastq format.
-A multifasta file of sequences can be used as custom database.
-A tab-separated file mapping sequence IDs to taxonomy IDs should also be provided. Sequence IDs should match the fasta
-header.
-
-seq.fa:
-
->Seq1
-AAAACGTACGA.....
-
->Seq2
-AAAACGTACGA.....
-
->Seq3
-AAAACGTACGA.....
-
-map.txt:
-
-Seq1 11
-
-Seq2 12
-
-Seq3 13
+The input data should be in fastq format. Accessions of sequence to be used as reference should also be provided.
+This analysis obtains fasta sequences of accessions, creates centrifuge indices and performs classification
+of input data using this custom database.
# Parameters
1. Input data in fastq format.
-2. Custom reference sequence in fasta format.
-3. Tab delimited accession map table (See help for details).
+2. Accession list of sequences to be used as reference.
# Results
