Update by asebastian on Tue Nov  7 12:09:45 EST 2017 from Aswathys-iMac.local
-all: taxonomy lamar fishdb
+all: taxonomy input fishdb
clean:
rm -rf blastdb lamar taxonomy input fish_species
@@ -13,10 +13,10 @@ taxonomy/nodes.dmp:
centrifuge-download -o taxonomy taxonomy
-# Lamar test data.
-lamar: lamar/sequences.tar.gz
+# Test data.
+input: input/fish_sequences.tar.gz
-lamar/sequences.tar.gz:
+input/fish_sequences.tar.gz:
mkdir -p input fish_species
# Get virus dataset
curl http://iris.bx.psu.edu/projects/testdata/viral-data/col_bhv.fastq.gz > input/virus_sample1.fastq.gz
@@ -37,7 +37,7 @@ lamar/sequences.tar.gz:
# Fish blast database.
fishdb: blastdb/fish_species/fish_species.nin
-blastdb/fish_species/fish_species.nin: lamar
+blastdb/fish_species/fish_species.nin: input
mkdir -p blastdb/fish_species
#
# Get fish accession map
