Remove unused subsampling scheme
@@ -141,51 +141,6 @@ subsampling:
exclude: "--exclude-where 'region={region}'"
sampling_scheme: "--probabilistic-sampling"
- # Custom subsampling logic for regions
- nextstrain_local:
- # Focal samples for region
- division_early:
- group_by: "year month"
- max_sequences: 200
- sampling_scheme: "--probabilistic-sampling"
- exclude: "--exclude-where 'division!={division}'"
- # Contextual samples for region from the rest of the world
- region_early:
- group_by: "division year month"
- max_sequences: 600
- sampling_scheme: "--probabilistic-sampling"
- exclude: "--exclude-where 'region!={region}'"
- # Contextual samples for region from the rest of the world
- global_early:
- group_by: "country year month"
- max_sequences: 400
- sampling_scheme: "--probabilistic-sampling"
- exclude: "--exclude-where 'region={region}'"
- priorities:
- type: "proximity"
- focus: "region_late"
-
- division_late:
- group_by: "year month"
- max_sequences: 1200
- sampling_scheme: "--probabilistic-sampling"
- exclude: "--exclude-where 'division!={division}'"
- # Contextual samples for region from the rest of the world
- region_late:
- group_by: "division year month"
- max_sequences: 1200
- sampling_scheme: "--probabilistic-sampling"
- exclude: "--exclude-where 'region!={region}'"
- # Contextual samples for region from the rest of the world
- global_late:
- group_by: "country year month"
- max_sequences: 400
- exclude: "--exclude-where 'region={region}'"
- sampling_scheme: "--probabilistic-sampling"
- priorities:
- type: "proximity"
- focus: "region_late"
-
# Custom subsampling logic for global region.
nextstrain_region_global:
africa_early:
