STATE
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State is a multi-scale AI model that operates on sets of cells to capture perturbation effects using a modern transformer architecture. • 10 items • Updated
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Check out the documentation for more information.
State Embedding model checkpoints are meant to be used with the Arc State repository.
State is distributed via uv.
Running from pypi
uv tool install arc-state
To generate embeddings given an AnnData:
state emb --model-folder <SE-600M_MODEL_PATH> --input <INPUT_ANNDATA>.h5ad --output <OUTPUT_PATH>.h5ad
Running from source
# Clone repo
git clone github.com:arcinstitute/state
cd state
# Initialize venv
uv venv
# Install
uv tool install -e .
To generate embeddings given an AnnData:
state emb --model-folder <SE-600M_MODEL_PATH> --input <INPUT_ANNDATA>.h5ad --output <OUTPUT_PATH>.h5ad
For model licenses please see MODEL_ACCEPTABLE_USE_POLICY.md, MODEL_LICENSE.md, and LICENSE.md.
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