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Apr 22

IVD-Net: Intervertebral disc localization and segmentation in MRI with a multi-modal UNet

Accurate localization and segmentation of intervertebral disc (IVD) is crucial for the assessment of spine disease diagnosis. Despite the technological advances in medical imaging, IVD localization and segmentation are still manually performed, which is time-consuming and prone to errors. If, in addition, multi-modal imaging is considered, the burden imposed on disease assessments increases substantially. In this paper, we propose an architecture for IVD localization and segmentation in multi-modal MRI, which extends the well-known UNet. Compared to single images, multi-modal data brings complementary information, contributing to better data representation and discriminative power. Our contributions are three-fold. First, how to effectively integrate and fully leverage multi-modal data remains almost unexplored. In this work, each MRI modality is processed in a different path to better exploit their unique information. Second, inspired by HyperDenseNet, the network is densely-connected both within each path and across different paths, granting the model the freedom to learn where and how the different modalities should be processed and combined. Third, we improved standard U-Net modules by extending inception modules with two dilated convolutions blocks of different scale, which helps handling multi-scale context. We report experiments over the data set of the public MICCAI 2018 Challenge on Automatic Intervertebral Disc Localization and Segmentation, with 13 multi-modal MRI images used for training and 3 for validation. We trained IVD-Net on an NVidia TITAN XP GPU with 16 GBs RAM, using ADAM as optimizer and a learning rate of 10e-5 during 200 epochs. Training took about 5 hours, and segmentation of a whole volume about 2-3 seconds, on average. Several baselines, with different multi-modal fusion strategies, were used to demonstrate the effectiveness of the proposed architecture.

  • 3 authors
·
Nov 19, 2018

Accurate Machine Learning Atmospheric Retrieval via a Neural Network Surrogate Model for Radiative Transfer

Atmospheric retrieval determines the properties of an atmosphere based on its measured spectrum. The low signal-to-noise ratio of exoplanet observations require a Bayesian approach to determine posterior probability distributions of each model parameter, given observed spectra. This inference is computationally expensive, as it requires many executions of a costly radiative transfer (RT) simulation for each set of sampled model parameters. Machine learning (ML) has recently been shown to provide a significant reduction in runtime for retrievals, mainly by training inverse ML models that predict parameter distributions, given observed spectra, albeit with reduced posterior accuracy. Here we present a novel approach to retrieval by training a forward ML surrogate model that predicts spectra given model parameters, providing a fast approximate RT simulation that can be used in a conventional Bayesian retrieval framework without significant loss of accuracy. We demonstrate our method on the emission spectrum of HD 189733 b and find good agreement with a traditional retrieval from the Bayesian Atmospheric Radiative Transfer (BART) code (Bhattacharyya coefficients of 0.9843--0.9972, with a mean of 0.9925, between 1D marginalized posteriors). This accuracy comes while still offering significant speed enhancements over traditional RT, albeit not as much as ML methods with lower posterior accuracy. Our method is ~9x faster per parallel chain than BART when run on an AMD EPYC 7402P central processing unit (CPU). Neural-network computation using an NVIDIA Titan Xp graphics processing unit is 90--180x faster per chain than BART on that CPU.

  • 11 authors
·
Mar 4, 2020

CoreMatching: A Co-adaptive Sparse Inference Framework with Token and Neuron Pruning for Comprehensive Acceleration of Vision-Language Models

Vision-Language Models (VLMs) excel across diverse tasks but suffer from high inference costs in time and memory. Token sparsity mitigates inefficiencies in token usage, while neuron sparsity reduces high-dimensional computations, both offering promising solutions to enhance efficiency. Recently, these two sparsity paradigms have evolved largely in parallel, fostering the prevailing assumption that they function independently. However, a fundamental yet underexplored question remains: Do they truly operate in isolation, or is there a deeper underlying interplay that has yet to be uncovered? In this paper, we conduct the first comprehensive investigation into this question. By introducing and analyzing the matching mechanism between Core Neurons and Core Tokens, we found that key neurons and tokens for inference mutually influence and reinforce each other. Building on this insight, we propose CoreMatching, a co-adaptive sparse inference framework, which leverages the synergy between token and neuron sparsity to enhance inference efficiency. Through theoretical analysis and efficiency evaluations, we demonstrate that the proposed method surpasses state-of-the-art baselines on ten image understanding tasks and three hardware devices. Notably, on the NVIDIA Titan Xp, it achieved 5x FLOPs reduction and a 10x overall speedup. Code is released at https://github.com/wangqinsi1/2025-ICML-CoreMatching/tree/main.

  • 9 authors
·
May 25, 2025 1

CoreInfer: Accelerating Large Language Model Inference with Semantics-Inspired Adaptive Sparse Activation

Large language models (LLMs) with billions of parameters have sparked a new wave of exciting AI applications. However, their high computational costs and memory demands during inference pose significant challenges. Adaptive sparse activation inference, which activates only a small number of neurons for each token, offers a novel way to accelerate model inference without degrading performance, showing great potential for resource-constrained hardware devices. Nevertheless, existing methods predict activated neurons based on individual tokens with additional MLP, which involve frequent changes in activation maps and resource calls, limiting the acceleration benefits of sparse activation. In this paper, we introduce CoreInfer, an MLP-free adaptive sparse activation inference method based on sentence-level prediction. Specifically, we propose the concept of sentence-wise core neurons, which refers to the subset of neurons most critical for a given sentence, and empirically demonstrate its effectiveness. To determine the core neurons, we explore the correlation between core neurons and the sentence's semantics. Remarkably, we discovered that core neurons exhibit both stability and similarity in relation to the sentence's semantics -- an insight overlooked by previous studies. Building on this finding, we further design two semantic-based methods for predicting core neurons to fit different input scenarios. In CoreInfer, the core neurons are determined during the pre-filling stage and fixed during the encoding stage, enabling zero-cost sparse inference. We evaluated the model generalization and task generalization of CoreInfer across various models and tasks. Notably, on an NVIDIA TITAN XP GPU, CoreInfer achieved a 10.33 times and 2.72 times speedup compared to the Huggingface implementation and PowerInfer, respectively.

  • 6 authors
·
Oct 23, 2024

ShapeSplat: A Large-scale Dataset of Gaussian Splats and Their Self-Supervised Pretraining

3D Gaussian Splatting (3DGS) has become the de facto method of 3D representation in many vision tasks. This calls for the 3D understanding directly in this representation space. To facilitate the research in this direction, we first build a large-scale dataset of 3DGS using the commonly used ShapeNet and ModelNet datasets. Our dataset ShapeSplat consists of 65K objects from 87 unique categories, whose labels are in accordance with the respective datasets. The creation of this dataset utilized the compute equivalent of 2 GPU years on a TITAN XP GPU. We utilize our dataset for unsupervised pretraining and supervised finetuning for classification and segmentation tasks. To this end, we introduce \textit{Gaussian-MAE}, which highlights the unique benefits of representation learning from Gaussian parameters. Through exhaustive experiments, we provide several valuable insights. In particular, we show that (1) the distribution of the optimized GS centroids significantly differs from the uniformly sampled point cloud (used for initialization) counterpart; (2) this change in distribution results in degradation in classification but improvement in segmentation tasks when using only the centroids; (3) to leverage additional Gaussian parameters, we propose Gaussian feature grouping in a normalized feature space, along with splats pooling layer, offering a tailored solution to effectively group and embed similar Gaussians, which leads to notable improvement in finetuning tasks.

  • 8 authors
·
Aug 20, 2024 2

OCSampler: Compressing Videos to One Clip with Single-step Sampling

In this paper, we propose a framework named OCSampler to explore a compact yet effective video representation with one short clip for efficient video recognition. Recent works prefer to formulate frame sampling as a sequential decision task by selecting frames one by one according to their importance, while we present a new paradigm of learning instance-specific video condensation policies to select informative frames for representing the entire video only in a single step. Our basic motivation is that the efficient video recognition task lies in processing a whole sequence at once rather than picking up frames sequentially. Accordingly, these policies are derived from a light-weighted skim network together with a simple yet effective policy network within one step. Moreover, we extend the proposed method with a frame number budget, enabling the framework to produce correct predictions in high confidence with as few frames as possible. Experiments on four benchmarks, i.e., ActivityNet, Mini-Kinetics, FCVID, Mini-Sports1M, demonstrate the effectiveness of our OCSampler over previous methods in terms of accuracy, theoretical computational expense, actual inference speed. We also evaluate its generalization power across different classifiers, sampled frames, and search spaces. Especially, we achieve 76.9% mAP and 21.7 GFLOPs on ActivityNet with an impressive throughput: 123.9 Videos/s on a single TITAN Xp GPU.

  • 5 authors
·
Jan 12, 2022

SpAtten: Efficient Sparse Attention Architecture with Cascade Token and Head Pruning

The attention mechanism is becoming increasingly popular in Natural Language Processing (NLP) applications, showing superior performance than convolutional and recurrent architectures. However, attention becomes the compution bottleneck because of its quadratic computational complexity to input length, complicated data movement and low arithmetic intensity. Moreover, existing NN accelerators mainly focus on optimizing convolutional or recurrent models, and cannot efficiently support attention. In this paper, we present SpAtten, an efficient algorithm-architecture co-design that leverages token sparsity, head sparsity, and quantization opportunities to reduce the attention computation and memory access. Inspired by the high redundancy of human languages, we propose the novel cascade token pruning to prune away unimportant tokens in the sentence. We also propose cascade head pruning to remove unessential heads. Cascade pruning is fundamentally different from weight pruning since there is no trainable weight in the attention mechanism, and the pruned tokens and heads are selected on the fly. To efficiently support them on hardware, we design a novel top-k engine to rank token and head importance scores with high throughput. Furthermore, we propose progressive quantization that first fetches MSBs only and performs the computation; if the confidence is low, it fetches LSBs and recomputes the attention outputs, trading computation for memory reduction. Extensive experiments on 30 benchmarks show that, on average, SpAtten reduces DRAM access by 10.0x with no accuracy loss, and achieves 1.6x, 3.0x, 162x, 347x speedup, and 1,4x, 3.2x, 1193x, 4059x energy savings over A3 accelerator, MNNFast accelerator, TITAN Xp GPU, Xeon CPU, respectively.

  • 3 authors
·
Dec 17, 2020