/*
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 * 2. Redistributions in binary form must reproduce the above copyright
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 *    software without specific prior written permission.
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 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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#include "deepvariant/utils.h"

#include <gmock/gmock-generated-matchers.h>
#include <gmock/gmock-matchers.h>
#include <gmock/gmock-more-matchers.h>

#include "tensorflow/core/platform/test.h"
#include "third_party/nucleus/testing/protocol-buffer-matchers.h"
#include "third_party/nucleus/testing/test_utils.h"

namespace learning {
namespace genomics {
namespace deepvariant {

using nucleus::EqualsProto;

TEST(UtilsTest, TestMakeAllele) {
  EXPECT_THAT(MakeAllele("A", AlleleType::REFERENCE, 1),
              EqualsProto("bases: \"A\" type: REFERENCE count: 1"));
  EXPECT_THAT(MakeAllele("AC", AlleleType::INSERTION, 10),
              EqualsProto("bases: \"AC\" type: INSERTION count: 10"));
}

TEST(UtilsTest, TestSimplifyRefAlt) {
  EXPECT_EQ(SimplifyRefAlt("CAA", "CA"), "CA->C");
  EXPECT_EQ(SimplifyRefAlt("CA", "C"), "CA->C");
  EXPECT_EQ(SimplifyRefAlt("ATGTG", "ATGTGTGTGTGTG"), "A->ATGTGTGTG");
  // This input will likely not happen the way we currently use this function.
  // But I want to make sure the output is not empty.
  EXPECT_EQ(SimplifyRefAlt("C", "C"), "C->C");
}

}  // namespace deepvariant
}  // namespace genomics
}  // namespace learning
